Hybrid Splice Site Conservation

Conservation of predicted recursive splice sites in D. melanogaster and D. pseudoobscura.

Anaylsis was limited to experimentally verified sites or predicted sites with scores >= 80 and a consensus branch point.

Burnette JM, Miyamoto-Sato E, Schaub MA, Conklin J, Lopez AJ. (2005). Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements. Genetics 170(2):661-74.

Key to Table

Top line = D. melanogaster

Bottom line = D. pseudoobscura

^* Length estimated due to contig gap or exon not sequenced.

^** Region in contig gap or not sequenced.

^† CE = Cassette Exon. AT = Alternative 3' Exon.

Gene Name	Intron Number	Intron Length (nt)	RP Location	RP Sequence	RP Score	Notes^†
shaggy	2	27,819 35,128	3,282 6,496	CAUUUUCUUUCCAGGUAAGUUG CCCUCUCUUUUCAGGUAAGUUG	89 80
			19,246 26,585	UCUUCUAUUUGUAGGUAAGUGU UUCUCUCUUUCUAGGUAAGUUU	84 83
dunce	1	68,049 76,042	41,686 53,047	UCUUAUCUUUUCAGGUAAGUUG UUUUCUCAUUUCAGGUGAGUGU	89 86
	4	74,355 95,939	7,335 8,370	UUCCUUUCUUCCAGGUGAGUUC UGAUUUCUUUGCAGGUGAGUUU	85 85
			39,145 51,453	UUUUUUCUUUACAGGUAAGUCG UUUCUUUUUUACAGGUGAGUGU	94 91
			46,914	UUUUCUCUUUACAGGUAAGUCG ^**	91
Fasciclin 2	2	48,434 50,383	12,460 15,430	UUUUCUCCUUCCAGGUAAGUGU UCUCUUUCUUUCAGGUAAGUGU	92 90
			21,491 27,102	UGUUUCUUUUGCAGGUACGUGC CAAACUCUUUGCAGGUAUGUGU	83 70
CG9650	1	24,616 25,476	16,968 14,917	CUCUCUAUUUCCAGGUGAGUUG UCUUUUCUUUGCAGGUGAGUUC	79 89
cut	1	36,241 39,282	12,322 9,646	UUCUUCUUUUACAGGUAUGUUU UUAUUUAAUUGCAGGUAUGUGA	86 79
retinal degeneration A	3	12,711 15,649	1,729 1,490	UCUUUUACUUGCAGGUACGUAA GCGUUCUUUUGCAGGUACGUAA	85 76
alpha Mannosidase I	1	44,374 56,637^*	19,145 27,637	UCUUUUACUUUCAGGUGAGUUG ACGUUUACUUUCAGGUGAGUAG	88 80
			38,717	AUUUCCCAUUGCAGGUGAGUUA ^**	83
CG32666	2	56,477 55,868^*	14,049 15,259	UUGUUUACUUGCAGGUAAGAGA GUUUGUUUUUACAGGUAAAAGA	81 69	Displaced by 407 nt
			28,617 35,089	UUCUUUUUUUACAGGUAAGCUU CUCUUUCUUUACAGGUAAGAUA	87 81
Tenascin accessory	1	43,564 ^*	19,273	CUCUUCUCUUUCAGGUAUGUAU ^**	83
multiple edematous wings	3	31,505 ^*	17,391	UUCGUCUUUUUCAGGUAUGUAC Not Found	80	CE
flotillin 2	2	83,206 90,862	20,183 23,609	CUUUGUAUUUACAGGUGAGUGA UAUCUCCCUUACAGGUGAGUGG	83 84
			44,665 53,414	AUCUUUCAUUACAGGUAAGCUU UUCUUUCAUUACAGGUUAGUUC	79 81
bazooka	1	27,800 34,579	14,155 14,156	UUAUCUACUUGCAGGUAAGAUA UUAUUUACUUUUAGGUAAGAGC	80 76
CG32560	3	24,955 25,476	14,569 14,913	UCCACUACUUACAGGUGAGUAC UUUACUAUUUGCAGGUGAGUAC	78 86
Shaker	1	85,738 88,031	21,172 18,961	UUUUCUAAUUUCAGGUGAGUAA UCUUCUCUUUGCAGGUGAGUUA	88 86
Beadex	1	31,271 33,843	12,402 12,696	CCUUGUUUUUCCAGGUAAGUGU CUCUCUCUUUCCAGGUAAGUGU	85 83
CG32521	1	69,242 50,019	42,614 48,584	UUAUCUCGUUGCAGGUGAGUUU UAUCUCGUUCGCAGGUGAGUGU	82 78
split ends	2	20,759 58,995	12,360 34,817	UUUUUUAUUUAUAGGUGCGUAU UUUGUAUUUUCCAGGUGCGUAU	82 80
dachsous	2	48,486 45,184	21,937 17,839	AUCUUUUAUUUCAGGUAAGUCC CUCUAUCUUUACAGGUAAGCCA	84 75
leak	1	22,651 28,406	15,042 19,031	UCUUCUCUUUCUAGGUAAGCAA CUCUUUCGUUUUAGGUAAGGAA	79 71
CG14351	2	43,700 54,529	11,083 16,026	UUCUUUCUUUCUAGGUAAGCGA UUCUGUCUUUCCAGGUAUGUCA	77 76
CG31666	2	36,280 47,867	5,984 10,686	UUUUUUUUUUGCAGGUAAGCAC UUUCUCUCAUUGAGGUAAGCGA	91 70
			25,033 35,881	CUUUUUACUUACAGGUAACUAU CCUUCUACUUACAGGUAACUAA	84 76
lilliputian	2	54,113 81,376	16,160 23,343	CUUUUUCUUUGCAGGUGAGUCA UUGUUUCUUUACAGGUGAGUCA	87 85
			33,998 54,327	UCUUUUCUUUGCAGGUGAGUUC UUUUCUCUGUGCAGGUGAGUUG	89 82
echinoid	2	41,744 60,511^*	13,686 1,800	CCAUUUCAUUUUAGGUAAGUUA UCGUCUCUUUUUAGGUAAGUCU	78 77
			23,485 35,887	CUUCUCGUUUGCAGGUAAGCUU CUCUCUCUUUGCAGGUAAGCAA	81 78
CG15630	1	55,183 64,166	28,137 32,385	UUUGUCUCCUGCAGGUACGUAC UUUGUCUCCUGCAGGUACGUAC	80 80
thickveins	2	19,718 28,350	11,761 16,858	UCUUUUCAUUUCAGGUAAGUGU UUCUUUUGUUUCAGGUAAGUUU	90 89
Rapgap1	1	27,676 36,611	13,204 17,213	UUUUUUCUUUGCAGGUUAGUAC UUUGCUCUUUGCAGGUUAGUAA	90 82
CG32982	9	27,192 29,642	21,289 22,804	CUUUCUCUUUCCAGGUGAGUUG UUGUGUAUUUUCAGGUGAGUUU	85 82
Sema-1a	3	66,730 74,678	25,081 30,036	UCUAUUUCUUUUAGGUAAGCUG AUUUUUCAUUGCAGGUAAGCUU	77 83
taiman	2	42,178 43,798^*	10,630 13,580	UCUUCUCAUUGCAGGUAUGUAU AUUUUUCCUUUCAGGUAUGUAA	82 85
			22,651	UUCUUUCUUUGCAGGUAAGCAA ^**	86
Nicotinic Acetylcholine Receptor 30D	2	43,779 44,937	14,654 14,284	UCUUUUACUUACAGGUAAGUGC UCUUUUACUUACAGGUAAGUGC	86 90
CG31721	2	73,579 63,076	9,940 10,144	UCUCUCUUUUUCAGGUAUGUUA CCUCUCUUUUUCAGGUACGUUA	84 79
			59,953 50,684	AUUUUUUAUUGCAGGUAUGUUA UUCUUUCGUUGCAGGUACGUUC	83 78
CG31757	3	72,912 73,659	53,296 51,794	UCAUUUCAUUGCAGGUAAGUCA UCGUUUCAUUGCAGGUAAGUCA	85 82
bunched	3	59,108 81,354^*	16,099 22,706	UCUUUUAUUUUCAGGUAAGCAA UCUUUUAUUUGCAGGUAAGCAA	87 87
			29,604 42,371	CUCUUUUUUUUCAGGUAUGUAU UCUUUUAUUUACAGGUAUGUUG	83 84
	4	18,891 22,355^*	8,698 92,816	UCUUCUCUUUGCAGGUAAGCAA UCUUCUCUUUGCAGGUAAGCAA	84 84
kuzbanian	3	50,959 75,692	19,369 26,655	UCUUCUCUUUACAGGUGAGUGC UUCUCUCUUUACAGGUGAGUGC	85 83
			35,424 50,998	UUUAUUUUUUUCAGGUAAUUUG UUUUUUUUUUCUAGGUAAGAUC	83 83
centaurin gamma 1A	1	54,867 54,495	35,642 34,859	UUUCUUUCUUUCAGGUAAGCUC CUUCUUUUUUGCAGGUAAGCAU	86 85
outspread	1	52,318 135,892^*	32,099 ^**	UGUUCUCGUUUCAGGUAUGUAC CGUUCUCGUUUCAGGUAUGUAC	80 73
	2	24,165 33,591	9,025 12,987	UUCUUUUCUUUCAGGUGAGUUA UUCUUUUCUUUCAGGUGAGUUA	89 89
CG15138	2	54,422 66,268	25,036 34,024	UCUUUGUUUUUCAGGUAAGUCG CUUUGUCUUUUCAGGUAAGUCG	88 84
Cadherin-N	11	39,923 39,303	20,500	AUUCAUUCUUUCAGGUAUGUAA Not Found	81
Fasciclin 3	2	62,671 79,755^*	27,005 35,443	UCUUUUCGUUACAGGUAUGUAU UCUUUUAUUUACAGGUAAGUUU	84 94
Furin 1	1	40,500 ^*	32,589 ^**	UUCUCUCUUUGCAGGUAAGCCA UUUUCUCUUUAAAGGUAAGCCA	79 76
complexin	3	10,713 14,327	1,603 2,786	UCUUUUAUUUACAGGUAAGCGU UCUUAAAUUUUCAGGUAAGCGU	86 79
prickle	1	57,449 46,193	23,935 25,044	UUUUCUCGUUACAGGUAAGUUG CGCUCUCAUUCCAGGUAAGUUG	88 76
pipsqueak	3	48,359 37,351	18,137 17,373	CUUUCUCUUUGCAGGUAAGCCA CUUUCUCUUUGCAGGUAAGCGC	80 80
frazzled	1	26,746 29,065	11,999	AUUCUCCUUUGCAGGUGAGUGC Not Found	84
faint sausage	3	51,980 43,655	17,914 16,204	UGUUCUCUUUCUAGGUAAGUGC CUCUCUCUUUGCAGGUAAGAAA	81 78
			32,224	UUUCUUCUUUGCAGGUAAGUUC Not Found	92
mastermind	2	27,528 27,509	14,399 11,627	UUCUCUCGUUGCAGGUGAGUUU CUCUCUCGUUGCAGGUGAGUUC	81 76
muscleblind	2	75,030 78,889^*	19,772	UCUUCUUUUUUCAGGUAUGUAC ^**	84	AT
			29,924	CUAUCUAUUUUCAGGUAAGUUU Not Found	86
			40,012	UCUAUUCUUUGCAGGUGAGUGU CUCUCUCGUUGCAGGUAUGUUU	86 72	Displaced by 150 nt
			56,513	UCUUCUAUUUCCAGGUAAAUUU CUCUCUCGUUACAGGUAAGACA	81 71
serrano	4	41,483 39,504	25,056 24,360	CUAUCUAUUUGCAGGUAAGUCU UUGUUUCUUUUCAGGUAAGUGC	83 88
smooth	10	27,461 21,898	13,737	UACUCUCUUUGUAGGUAAGUUU Not Found	80
			18,272 19,080	UACUCUCUUUGUAGGUAAGUUU UUUUCUCAUUUUAGGUAAGUUU	80 85
	11	26,555 25,932^*	12,139 13,228^**	CCCACUCACUACAGGUAAUUCC ACUGAUCUUACCAGGUAAGUCC	90 71
	12	35,791 38,847	27,944 29,392	UUUUGUCUUUUCAGGUAAGUCG CUUCUUACUUGCAGGUAAGUCG	88 85	CE CE
Epidermal growth factor receptor	6	31,587 29,697	10,561 10,694	UUCCAUCUUUGCAGGUGAGUUC UCUUCUCGUUGCAGGUGAGUUU	81 83
CG13499	2	32,123	16,515	UCUAUUUCUUACAGGUAACUAU ^**	83
plexus	2	35,108 36,387	28,168 29,403	UUUGUUUCUUGCAGGUGAGUGU UCUGUCUCUUUCAGGUGAGUUU	88 86
nahoda	1	7,675 ^*	469	UUCUCCUCCUUCAGGUGAGUUC Not Found	81
bric a brac 1	1	58,746 19,845^*	19,429 8,900	CUUUAUCGUUACAGGUAAGUUC UUGUUUCGUUGCAGGUAAGUGU	85 85
CG32296	1	36,790 43,527	27,937 31,876	UUGUAUCUUUGCAGGUGAGUUU CUUCUUUUUUGCAGGUAAGUUC	84 90
Ecdysone-induced protein 63E	1	35,958 49,915	16,984 24,496	AUUUUUUAUUCCAGGUAAGUUC AAUUUUCGUUUCAGGUAAGUUC	90 84
CG32264	1	30,479 34,473	6,382 6,953	CUCUUCUCUUGCAGGUAAGUUU UAUCUCUUUUGCAGGUAAGUCU	89 89
	4	43,264 57,184	28,501 36,409	UCUUUAUUUUCCAGGUGAGUUU UGUUCCCUUUCAGGGUGAGUUU	89 64
Cip4	2	23,912 23,028	10,909 10,077	UCUUUCUCUUGCAGGUAAGUUG UCUUUGUUUUCCAGGUAAGUUU	93 90
Guanine nucleotide exchange fa	2	25,221 29,034^*	14,909 ^**	CUUUUUCGUUUCAGGUUAGUAG UGGUUUGUUUUCAGGUUAGUAG	82 77
CG32423	3	48,508 64,272	25,135 33,465	CUAUUUUUUUGCAGGUAAGUUU UAUCUUUUUUGCAGGUAAGUUU	90 91
still life	2	29,976 30,629	8,585 9,398	UUUUGCCAUUGCAGGUAAGCUA UUUUUCCUUUGCAGGUAAGCAU	81 90
CG18769	3	28,185 30,035	19,058 20,916	UCUUUUAUUUACAGGUGAGUUG UACUCCAUUUGCAGGUGAGUUA	89 80
PAR-domain protein 1	1	49,017 53,599	28,368 31,107	GGUUUUCUUUAUAGGUGAGUAA UUCUCUAUUUGCAGGUGAGUUU	79 84
			38,529 42,170	UCUUUUAUUUACAGGUAAGCAU UAUUUCAUUUCCAGGUAAGCUU	88 86
nemo	3	58,071 43,488^*	13,908 ^**	UUCUCUCUUUUUAGGUAAGUUC CUUUCUCGUUUUAGGUAAGUUU	82 80
CG32062	2	49,822 59,953	1,306 1,371	UCUUUUCUUUGCAGGUACGUUU UCUUUUCGUUGCAGGUACGUUU	86 81
			16,525 18,781	CUUUUUCAUUACAGGUAAGUUU CUUUUUCAUUACAGGUAAGUUG	91 89
			29,693 34,731	UCUUCUAUUUGCAGGUACGUCU UUUACAUUUUGCAGGUACGUCU	80 78
			35,916 43,243	UCUAUUUCUUUCAGGUAUGUUU UGCCUUUCUUUCAGGUAUGUCC	84 74
division abnormally delayed	1	48,657 64,794	6,535 9,301	UUCUCCAUUUGCAGGUGCGUAU UCCUCCGUUUGCAGGUGUGUAU	78 73
Mob1	2	34,551 32,968	7,776 7,177	UGUUUUCCUUUCAGGUGAGUGU CUCCUCUCUUUCAGGUGAGUAA	87 83
rolling pebbles	2	32,102 28,493	14,600 12,889	CUUUUUCUUUCCAGGUAAGUUU UUUUCUACUUUUAGGUAAGUCU	93 85
bruno-3	1	41,973 42,615	19,171 16,423	UUGUUUCUUUCCAGGUAAGUGA UUCUUUACUUACAGGUAAGUGA	89 89
	3	25,853 28,695	12,823 14,086	GUCUGUCUUUGCAGGUAAGUUG AUGUGUCUUUCCAGGUAAGUUG	80 80	CE CE
	6	54,245 60,371	22,117 24,979	CUCUCUCUUUUCAGGUAAGUUC CUCUCUCUUUCCAGGUAAGUUC	84 83
nuclear fallout	6	16,972 17,363	3,619 4,147	UCCUUUAUUUCCAGGUAAGCAA GGCCCUCUUUUUAGGUAUUUAC	82 53
frizzled	1	29,170 28,678	14,666 14,921	UCUGUUUCUUUUAGGUAAGUCU UCUGUCUAUUGCAGGUACGUGU	83 78
	4	49,409 49,125	14,623 15,368	UCCUCUUCUUUCAGGUAUGUAC UUUCCAUCUUUCAGGUAUGUAA	78 81	AT AT
			28,780 30,354	UCUUUUCAUUUCAGGUAUGUAA UCUUGUCGUUGCAGGUAUGUUA	84 76
dally-like	1	30,913 27,594	11,303 8,762	UGCUCUCAUUACAGGUAAGUUC GCUUUCUUUUGCAGGUAAGUAC	81 89
CG33158	3	62,790 71,309^*	25,794 29,116	UUUUCUCAUUUCAGGUAAGUCC UCUUUUCAUUUCAGGUGAGUCU	88 86
Ecdysone-induced protein 75B	1	65,240 51,717	24,527 10,901	UCCUUUUCUUGCAGGUAUGUAC CCGUCUCGUUACAGGUAUGUAC	82 69
			36,566 22,495	UAUUCUACUUUCAGGUAAGUCA GUUUUUCAUUUCAGGUAAGUCA	87 86
			42,710	UCUUUCCAUUCCAGGUGAGUGA Not Found	86
	2	23,400 20,043	7,157	UCUUUCCAUUGCAGGUAAGCUU Not Found	84
CG6896	2	34,325 39,889	25,878 30,025	UCUCUUUAUUUCAGGUAUGUUA UUCUUUCUUUUUAGGUAAGAUG	81 78	Displaced by 103 nt
naked cuticle	1	33,245 33,636	18,669 19,149	UCUUUUCCUUGCAGGUGUGUAC CCGUUUCCUUGCAGGUGUGUAC	82 73
CG32223	2	21,594 18,173	7,989 7,083	UAUUUUUAUUCCAGGUAAUUAC CUGUUUUAUUUCAGGUAACUCC	82 72
CG6014	1	28,445 32,034	9,248 10,158	AUUUCCCUUUGCAGGUAAGUUC UCUUUUCAUUGCAGGUAAACGC	88 72
Tenascin major	1	66,250 ^*	7,162 8,180	UUCUUCUAUUACAGGUGAGUAA AAUUUCCUUUUCAGGUGAGUAA	88 87
			25,811	UCUUCUGCUUUCAGGUAUGUAA ^**	81
CG33202	1	26,006 26,076	3,233 2,911	UCUCUCCUUUUUAGGUAAGCAU UCUCUCUUUUUUAGGUAAAGCA	80 66
polychaetoid	1	49,376 48,266	33,402 26,266	UUUUUUCGUUGCAGGUAUGUAU UUUUUUUUCCUCAGGUAUGUAU	86 82
pumilio	8	132,738 167,793	12,869 20,816	AUUUUUUUUUGCAGGUGAGUUU UCCUUUCCUUGCAGGUGAGUUG	91 83
			72,429 96,908	CUUUUUCUUUGCAGGUAGGUGA CUUUCUCGUUGCAGGUAGGUGA	83 75
			82,343 108,500	UCUUUUCUUUGCAGGUAAGUUU UUGUUUCUUUGCAGGUGAGUUU	94 87
			92,336 119,826	UCCUUUUCUUUCAGGUAAGUUC CGUUUUCGUUUCAGGUAAGUUU	89 84
			101,802 130,083	UCUUCUCAUUGUAGGUAAGUCC UCUUCUCAUUCUAGGUAAGUCC	79 79
			115,024 146,460	UUUUCUCUUUACAGGUAAGUGA UUUGCUAUUUCCAGGUAAGUGA	92 86	CE CE
			121,443 153,576	UUCUCUCUUUUUAGGUAAGUUU CGCUCUCUUUUUAGGUAAGUUC	84 74
pasilla	1	12,203 13,623	11,171 12,721	UCUUUCCAUUUCAGGUGAGUCA CUUUGCCAUUUCAGGUGAGUCA	85 79	CE CE
CG31363	1	25,937 25,932	2,634 2,343	UUCUCUUUUUGCAGGUAAGUUC CCGUCUCUCUCCAGGUAUGUUU	88 69
CG3563	1	45,465 61,786	21,620 27,334	UUCUUUUUUUGCAGGUGAGUUC UUUCACUUUUGCAGGUGAGUUC	89 86
Ultrabithorax	3	73,651 74,606	7,391 7,363	GCUUGCAUUUUCAGGUAAGAUA GGUUGCAUUUUCAGGUAACAUA	74 63	CE CE
			22,113 22,620	UCUAUUUUUUCCAGGUAAGAGA UUUCUGUUUUCCAGGUAAGAGA	82 81	CE CE
			48,191 50,108	CUUCUCUUUUCUAGGUAAGUGU UUCUCUUCUUUUAGGUAAGUGU	85 83
couch potato	2	28,892 40,167	21,789 30,648	UUUUAUCUUUGCAGGUGAGCUA CUCUUUUUUUACAGGUGAGUUU	83 87
fruitless	9	79,261 79,937	51,695 53,645	UUCUACUUUUCUAGGUAAGUCC UUCUAUAUUUCUAGGUAAGUUU	81 82
dystrophin	22	47,738 66,468	20,452 26,803	UAUUUCUCUUGCAGGUAUGUAC AUUAUUUUUUUCAGGUAUGUAA	86 84	Displaced by 488 nt
			31,528 41,617	CUUUUUCAUUGCAGGUAAGCGU UUUUUUCAUUGCAGGUAAGCGU	82 85
CG5060	1	36,093 39,458^*	21,438 20,674	UCCUUAUUUUUCAGGUAUGUAC UUUUGUUUUUUCAGGUACGAUU	80 77
CG31176	1	44,598 56,573	15,862 20,930	CUUUUCUAUUACAGGUAUGUAC UCUGUUCCUUUCAGGUAUGUAC	84 80
held out wings	2	19,345 24,645	10,543 12,984	UCGUUUACUUGCAGGUGAGUUU UUGUUUAUUUGCAGGUGAGUUU	84 87
CG31163	3	24,509 32,424^*	10,471 14,722	UUUAUUCGUUCUAGGUGAGUUU CUCUCUCUUUUUAGGUAAGUUU	80 80
	4	103,624 83,076^*	22,848 31,965	AUUUCUCGUUUCAGGUAAGUUG CUUUUUCGUUUCAGGUAAGUUC	84 87
			44,774 57,680	UCUUUUAAUUGCAGGUAAGCUC UCUUCUAAUUGCAGGUAAGCUC	82 79
			57,913	UCUUCUACUUCCAGGUAAGCUG ^**	81
klingon	2	33,040 16,714^*	20,858 9,005	UUAUUUAUUUGCAGGUGAGUUC UUAUUUAUUUGCAGGUAAGUCC	88 88
Pellino	2	23,401 30,766	6,495 5,337	CUCUUCUUUUGCAGGUAAGUUU AUUUUUUUUUGCAGGUAAGUUU	89 94
Nicotinic Acetylcholine Receptor alpha-96Aa	2	29,990 31,873	16,785 18,147	UUCUUUGCUUGCAGGUGAGUUG UUGUUUUCUUGCAGGUGAGUCA	85 85
musashi	2	44,350 58,387	41,961 55,623	UUUCUUUCUUUCAGGUAAGCAA UUCUUUCAUUUCAGGUAAGCGA	88 80
	4	20,151 25,808	9,297 12,595	UGUUUACUUUCCAGGUAAGUUC UGUUUACUUUGCAGGUAAGUUC	88 88
Transcript 48	2	25,252 36,977	13,821 17,594	UUUCUCUCUUGCAGGUAAAUAA UCUUUUCAUUGCAGGUAAACGA	86 72	Displaced by 265 nt
Toll	1	27,095 28,877	6,863 6,904	CUAUAUAUUUGCAGGUAAGCAG UUUUUGUUACGCAGGUAAGCAU	78 76
kayak	1	17,571 20,516	7,870 9,880	CUCUCUCGUUGCAGGUAAGUAG CUCUCUCGUUGCAGGUAAGUAG	80 80
headcase	1	28,904 33,264	9,756 11,796	ACAUUUCUUUGCAGGUAAGUGA CGCUCUCUUUGCAGGUAAGUAA	84 81
	2	49,001 43,136	21,448 13,621	UCGUUUCGUUGCAGGUGAGUUU CUCUCUCGUUGCAGGUGAGUUU	81 77
sanpodo	2	38,301 41,567	18,842 19,478	CAUUCUCUUUGCAGGUAAGCAA UCUCUUUUUUGCAGGUAAGCAA	80 85
hephaestus	3	16,320	9,738	UCUUCUGCUUUCAGGUAAGUUU ^**	88	CE
	4	77,163	49,726 ^**	CGAUUUAUUUACAGGUGAGUUA CGAUUUAUUUACAGGUGAGUUA	81 80
klarsicht	1	25,193 33,285	10,524 14,118	UUCUUUCUUUACAGGUGAGUUG CUUUUGCUUUUUAGGUGAGUGG	88 77
	5	43,328 56,481	12,833 17,639	UCUUCUCGUUUCAGGUAAGCAA CCGUCUAUUUCCAGGUAAGCAA	80 74
			33,187 41,541	UCUUCUCUUUCUAGGUAAGAAU UCCUCUCUUUGCAGGUAAGUAU	79 87
CG40120	3	22,899 ^*	7,349	UUUUGUUUUUGCAGGUCAGUCU ^**	83
CG12567	1	11,354 ^*	352	CUUUUACCUUUCAGGUAAGAAA ^**	84

^* = Estimated due to contig gap or exon not sequenced. ^** = Region in contig gap or not sequenced.^†CE = Cassette Exon. AT = Alternative 3' Exon.